This course intends to give a brief introduction (Theoretical & Practical) to the use of QuPath (free open-source software for "Quantitative Pathology") for analysis of tile & stitched large image datasets, such as those obtained at slide scanners from the Histopathology and Bioimaging Platforms.
The course will include:
1) Introduction to image analysis basic concepts (21st May)
2) Introduction to QuPath software (22nd-23rd May)
- Data visualization and representation
- Image segmentation
- Classification with machine learning
- Brief introduction to deep learning with QuPath extensions and automatization with groovy workflows
- Exercises
REQUIREMENTS:
Students must bring their own laptop, transformer, mouse and must have had previous contact with ImageJ/FIJI at a basic level.
Dates: 21-23 May 2025
Place: GIMM - Oeiras site
Typology: In Person
Application deadline: 11 May 2025
Acceptance notification: 12 May 2025
There is a limit of 20 participants!
For more information, please contact:
Patrícia Rodrigues: patricia.rodrigues@gimm.pt